| Disc 1: |
| 1. |
Main Titles (2:30) |
| 2. |
Strings of Prisoners (1:28) |
| 3. |
Inking the Plan (2:39) |
| 4. |
Save a Brother's Life (1:41) |
| 5. |
In the Yard (1:46) |
| 6. |
T-Bag's Coming for Dinner (1:45) |
| 7. |
Sucre's Dilemma (2:26) |
| 8. |
Sarah & Michael (1:42) |
| 9. |
Abruzzi is the Ticket (1:57) |
| 10. |
In the Tunnels (2:56) |
| 11. |
Unconditional (2:19) |
| 12. |
Conspiracy (2:42) |
| 13. |
Sarah (2:44) |
| 14. |
C-Note (2:07) |
| 15. |
An In-Be-Tweener (3:14) |
| 16. |
Prison Break (3:32) |
| 17. |
The Manhunt Begins (2:15) |
| 18. |
Special Agent Mahone (1:24) |
| 19. |
Veronica is Murdered (1:49) |
| 20. |
Linc & LJ (2:05) |
| 21. |
Stand-Off (1:59) |
| 22. |
Cat & Mouse (1:35) |
| 23. |
(Classified) (2:02) |
| 24. |
Remorse (2:30) |
| 25. |
Origami (1:03) |
| 26. |
Escape is Just the Beginning (2:12) |
| 27. |
Panama (1:22) |
| 28. |
Maricruz (1:09) |
| 29. |
Execution (1:51) |
| 30. |
Trouble in Paradise (1:19) |
| 31. |
Sona (1:36) |
| Disc Total: 64:39 |
Score 